Today I worked on assignment eight of the protein bioinformatics project I was able to get information from the website and data provided Gene: PIR Description: Homo sapiens pirin (PIR), transcript variant 1, mRNA. (from RefSeq NM_003662) Ensembl gene ID: ENSG00000087842.6 GENCODE biotype: protein_coding Gene class: coding Highest median expression: 16.80 RPKM in Bladder Total median expression: 281.69 RPKM Score: 407 Genomic position: hg38 chrX:15384799-15493564 The bargraph display has the same width and tissue order for all genes. Mouse hover over a bar will show the tissue and median expression level. The Squish display mode draws a rectangle for each gene, colored to indicate the tissue with highest expression level if it contributes more than 10% to the overall expression (and colored black if no tissue predominates). In Dense mode, the darkness of the grayscale rectangle displayed for the gene reflects the total median expression level across all tissues. Credits Statistical analysis and data interpretation was performed by The GTEx Consortium Analysis Working Group. Data was provided by the GTEx LDACC at The Broad Institute of MIT and Harvard.

Comments

Post a Comment

Popular posts from this blog

Blog 1

An academic personal website takes you a step further in terms of increasing your visibility because it is an ideal place to showcase your complete research profile. You will attract attention to your publications, your name recognition will increase and you will get cited more. Moreover, a website is also useful for networking and collaborating with others, as well as for job searching and application. this week i got started on trying to set up a website. currently with the first weeks of school have been hectic. but now with classes and assignments balancing out. i am able to work more on my website.
Read more

Blog 2

we have successfully gotten into groups which got us to learn more information about slack. Slack is a messaging app for business that connects people to the information they need. By bringing people together to work as one unified team, Slack transforms the way organizations communicate. which in this group we have assign a project of peppers around the world as a fake project to kinda get a feel around this program. we assaigned tasks and contients to each member which we got to research information about the pepper that we had to get information from. Then that lead to all the information being in our messages and how we analyzed others new findings as well . Now we are on to linkedin which is Having a LinkedIn account as a student proves that you are dedicated to pursuing a career. By being specific in your summary and connecting with people in the field that you'd like to end up in, you prove that you're putting in the time and effort required to succeed in your chosen car...
Read more

CHAPTER 2

We'll take a short tour of RStudio in this chapter. we will be writing the first R script along the way. The RStudio developers have excellent documentation on their website, which you can explore at your leisure. Rather than going over each and every choice, the aim here is to give us a broad overview. You can build new folders (directories) on the Files tab.You can also rename, erase, and transfer files on your computer. You can navigate to any location on your device using RStudio. When running in R, the program needs to know where to look for inputs and outputs, so it will look in a directory called a "working directory" first. The getwd feature, which can be entered in your console or in your script, can be used to locate your working directory.R suggests that you use the double question mark technique, which will be??meatloaf, since there is no documentation for meatloaf. A keyword search is launched as a result of this. The double question mark is simply a feat...
Read more