Today I worked on assignment eight of the protein bioinformatics project I was able to get information from the website and data provided Gene: PIR Description: Homo sapiens pirin (PIR), transcript variant 1, mRNA. (from RefSeq NM_003662) Ensembl gene ID: ENSG00000087842.6 GENCODE biotype: protein_coding Gene class: coding Highest median expression: 16.80 RPKM in Bladder Total median expression: 281.69 RPKM Score: 407 Genomic position: hg38 chrX:15384799-15493564 The bargraph display has the same width and tissue order for all genes. Mouse hover over a bar will show the tissue and median expression level. The Squish display mode draws a rectangle for each gene, colored to indicate the tissue with highest expression level if it contributes more than 10% to the overall expression (and colored black if no tissue predominates). In Dense mode, the darkness of the grayscale rectangle displayed for the gene reflects the total median expression level across all tissues. Credits Statistical analysis and data interpretation was performed by The GTEx Consortium Analysis Working Group. Data was provided by the GTEx LDACC at The Broad Institute of MIT and Harvard.

Comments

Post a Comment

Popular posts from this blog

To create the Tauntaun harvest data, we need to simulate the Tauntaun population through time. We’ll set up a 10 year population simulation, where we will track the number of male and female Tauntauns separately in each time step (each year). Tauntaun life history has been well studied by biologists on the icy planet of Hoth, and it’s reasonable to assume that life history characteristics are the same in Vermont. Individuals can begin breeding at the age of 1, and produce approximately 2 offspring per year. Individuals that are 0 years old are called “young” because they cannot breed. One-year-old breeders are called “recruits” because these individuals have been recruited into the breeding population. Tauntauns that survive the harvest and the natural mortality period are able to give advance to the birthday again. On the birthday, the animals that were 0 years old are now 1, and they instantly give birth to ~ 2 offspring. The animals that were 1 years old are now 2, and they in...
Read more

Blog 1

An academic personal website takes you a step further in terms of increasing your visibility because it is an ideal place to showcase your complete research profile. You will attract attention to your publications, your name recognition will increase and you will get cited more. Moreover, a website is also useful for networking and collaborating with others, as well as for job searching and application. this week i got started on trying to set up a website. currently with the first weeks of school have been hectic. but now with classes and assignments balancing out. i am able to work more on my website.
Read more

Blog post 3

There are many things on what i want to use my degree for and why.the goal is set diffrently its not only will i be making a finanical stable for myself but my family who immigrated here just 25 years ago.i wouldnt be able to make any oppurtities like these in senora mexico. i would want to use my degree to be able to give oppurtities to people who couldnt. Any way i can i feel like it doesnt just stop to just my degree but with what i do in the world that would help. i would open my own business just to help people who are in need for jobs or a foot in doors of industrties that are hard to get to.
Read more