Assignment two

Today I worked on assignment two of the protein bioinformatics project I was able to get information on my assigned protein Pirin o00625 and began to gather information. the summary about the conserved domain of pirin:

Pirin: Pirin

This family consists of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin i...

Accession: 

pfam02678

 

ID: 

367141

View in Cn3D Specific ProteinProteinSuperfamilySuperfamily MembersPubMed

Select item 389752

2.

Molecular Structure Image for cl21464

cupin_like: Conserved domain found in cupin and related proteins

A diverse protein domains superfamily which includes both metal-dependent and metal-independent enzy...

Accession: 

cl21464

 

ID: 

389752

View in Cn3D ProteinSuperfamily MembersPubMed

Select item 380445

3.

Molecular Structure Image for cd20311

cupin_Yhhw_C: Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, C-terminal cupin domain

This family includes the C-terminal domain of YhhW and YhaK, Escherichia coli pirin-like proteins wi...

Accession: 

cd20311

 

ID: 

380445

View in Cn3D Specific ProteinProteinSuperfamilySuperfamily MembersPubMed

Select item 380422

4.

Molecular Structure Image for cd20288

cupin_pirin-like_C: pirin-like, C-terminal cupin domain

This family contains the C-terminal cupin domain of pirin and pirin-like proteins, including Escheri...

Accession: 

cd20288

 

ID: 

380422

View in Cn3D ProteinSuperfamilySuperfamily MembersPubMed

Select item 380421

5.

Molecular Structure Image for cd20287

cupin_pirin-like_N: pirin-like, N-terminal cupin domain

This family contains the N-terminal cupin domain of pirin and pirin-like proteins, including Escheri...

Accession: 

cd20287

 

ID: 

380421

View in Cn3D Specific ProteinProteinSuperfamilySuperfamily MembersPubMed

Select item 380375



pirin [Arabidopsis thaliana]

 

Locus- LOCUS       NP_191481                287 aa            linear   PLN 14-FEB-2019

ACCESSION   NP_191481

VERSION     NP_191481.1

COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.            The reference sequence is identical to AEE79893.

 

Question: Are there any results in a species other than Homo sapiens that has a low E-value, high percent identity, and high percentage of query cover?  

 

Mus musculus has a low e value of 5e-96, percent identity of 52.16% and high percentage of query cover is 96%. 



 

  

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